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I understand what you're saying, but there's a bit of hair splitting of the term 'sick'. Your immune system responds, you display symptoms, it is what it is.
This is true, but their is a difference between mild symptoms of fever and malaise, and an actual infection that can kill you or severely debilitate you.
For the flu, its not really a big deal unless your in a high risk age group. But for diseases like smallpox, polio, tetanus, etc., the relatively mild side effects are greatly outweighed by the benefits.
Another important difference is that although your immune system is responding to the vaccine, the vaccine is not replicating or killing your cells, which means it is a controlled, limited response.