Damn good listMan, way too much stuff from what was considered alternative in the 90's but off the top of my head
Janes Addiction - Three Days
My Life with the Thrill Kill Kult - The Days of Swine and Roses
Ministry - Just One Fix
NIN - Head Like a Hole
Primus - Jerry was a Race Car Driver
Morrissey - Our Frank
Alice In Chains - Man in the Box
Rage Against the Machine - Bulls on Parade
Butthole Surfers - Human Cannonball